GSVIVT01006112001 (PUB8, B80)

Aliases : PUB8, B80

Description : U-box domain-containing protein 8 OS=Arabidopsis thaliana

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01006112001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00153p00035720	ATPUB17, PUB17,...	U-box domain-containing protein 1 OS=Medicago truncatula	0.04	OrthoFinder output from all 47 species
AT3G46510	PUB13, ATPUB13	plant U-box 13	0.03	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g054040	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g16049	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44183.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44184.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44185.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0102.g044585	ATPUB17, PUB17	not classified & original description: CDS=188-889	0.05	OrthoFinder output from all 47 species
Ceric.10G010200.1	Ceric.10G010200	not classified & original description: pacid=50612946...	0.02	OrthoFinder output from all 47 species
Ceric.10G010300.1	ATPUB17, PUB17,...	not classified & original description: pacid=50611933...	0.02	OrthoFinder output from all 47 species
Ceric.26G012900.1	Ceric.26G012900	not classified & original description: pacid=50598948...	0.02	OrthoFinder output from all 47 species
Dde_g03925	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04784	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g26730	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17103	PUB13, ATPUB13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_08792	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Gb_29129	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.04	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g25238	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28901	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g36544	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30958	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo75609	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
Solyc03g114160.1.1	Solyc03g114160	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Spa_g24085	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	6	72

External Links

No external refs found!

GSVIVT01006112001 (PUB8, B80)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation