1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01005813001

GSVIVT01005813001 (HOS1)


Aliases : HOS1

Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.ELYS scaffold nucleoporin


Gene families : OG0005065 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005065_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01005813001

Target Alias Description ECC score Gene Family Method Actions
AT2G39810 HOS1 ubiquitin-protein ligases 0.12 OrthoFinder output from all 47 species
Ala_g10365 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Als_g56636 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Aop_g13573 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55782.t1 HOS1, Aspi01Gene55782 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Cba_g25679 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Ceric.36G007400.1 HOS1, Ceric.36G007400 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Cre16.g683437 No alias No description available 0.04 OrthoFinder output from all 47 species
Dcu_g07754 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Ehy_g07914 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.05 OrthoFinder output from all 47 species
LOC_Os03g52700.1 HOS1, LOC_Os03g52700 ELYS scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
MA_10431906g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
MA_573521g0010 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Mp7g02710.1 HOS1 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Ore_g28868 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.06 OrthoFinder output from all 47 species
Pir_g10456 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Ppi_g01205 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.02 OrthoFinder output from all 47 species
Sam_g19447 No alias scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.04 OrthoFinder output from all 47 species
Solyc08g078320.3.1 HOS1, Solyc08g078320 ELYS scaffold nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Spa_g09103 HOS1 scaffold nucleoporin of nuclear pore complex *(ELYS) &... 0.03 OrthoFinder output from all 47 species
Zm00001e012079_P002 HOS1, Zm00001e012079 ELYS scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025151 ELYS_dom 174 449
No external refs found!