1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01005079001

GSVIVT01005079001


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).central subcomplex.NUP58 nucleoporin


Gene families : OG0006938 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006938_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01005079001
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00214550 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Cre16.g685217 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.01 OrthoFinder output from all 47 species
Gb_35852 No alias NUP58 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Mp5g05860.1 No alias NUP58 nucleoporin of nuclear pore complex 0.01 OrthoFinder output from all 47 species
Msp_g26503 No alias nucleoporin of nuclear pore complex *(NUP58) & original... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048478 replication fork protection IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051053 negative regulation of DNA metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:2000104 negative regulation of DNA-templated DNA replication IEP HCCA

No InterPro domains available for this sequence

No external refs found!