GSVIVT01004931001

No description available

Gene families : OG0004901 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004901_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01004931001
Cluster	HCCA: Cluster_51

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00133200	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g01754	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01003841001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_24145	No alias	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Mp5g06820.1	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Sam_g24709	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g009670.4.1	Solyc01g009670	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Zm00001e008319_P002	Zm00001e008319	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032828	PolyA_RNA-bd	257	319
IPR002646	PolA_pol_head_dom	102	230

External Links

No external refs found!