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  5. GSVIVT01004116001

GSVIVT01004116001


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.PES-BOP1-WDR12 (PeBoW) complex.BOP1 component


Gene families : OG0005027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01004116001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00239810 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
AT2G40360 No alias Transducin/WD40 repeat-like superfamily protein 0.16 OrthoFinder output from all 47 species
Aop_g12459 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
Azfi_s0280.g062281 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.08 OrthoFinder output from all 47 species
Ceric.28G059200.1 Ceric.28G059200 component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000382.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 OrthoFinder output from all 47 species
Cre10.g417950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Ehy_g04956 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
LOC_Os07g25440.1 LOC_Os07g25440 component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.2 OrthoFinder output from all 47 species
Len_g03870 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.03 OrthoFinder output from all 47 species
MA_10426057g0010 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.09 OrthoFinder output from all 47 species
Mp2g26050.1 No alias component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.17 OrthoFinder output from all 47 species
Pp3c18_14790V3.1 Pp3c18_14790 Transducin/WD40 repeat-like superfamily protein 0.05 OrthoFinder output from all 47 species
Sam_g10421 No alias component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW)... 0.06 OrthoFinder output from all 47 species
Smo165451 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Smo269521 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
Solyc01g103720.4.1 Solyc01g103720 component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.18 OrthoFinder output from all 47 species
Zm00001e017600_P002 Zm00001e017600 component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR012953 BOP1_N_dom 118 374
IPR001680 WD40_repeat 629 665
IPR001680 WD40_repeat 377 412
No external refs found!