GSVIVT01002785001 (RAB2A, AT-RAB2,...)

Aliases : RAB2A, AT-RAB2, RAB-B1B, ATRAB-B1B, RABB1C, ATRABB1C, ATRAB2A

Description : Ras-related protein RABB1c OS=Arabidopsis thaliana

Gene families : OG0001412 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001412_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01002785001

Target	Alias	Description	ECC score	Gene Family Method
Adi_g055675	RAB2A, AT-RAB2,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12063	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001001.25	RAB2A, AT-RAB2,...	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dcu_g02507	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05462	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Mp6g16450.1	RAB2A, AT-RAB2,...	B-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Msp_g08873	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g04594	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0114.g020920	RAB2A, AT-RAB2,...	B-class RAB GTPase & original description: CDS=1183-1821	0.04	OrthoFinder output from all 47 species
Zm00001e014961_P003	RAB2A, AT-RAB2,...	B-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e041052_P001	RAB2A, AT-RAB2,...	B-class RAB GTPase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
CC	GO:0070449	elongin complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	8	98

External Links

No external refs found!