GSVIVT01002752001

Description : Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris

Gene families : OG0008286 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008286_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01002752001

Target	Alias	Description	ECC score	Gene Family Method
AT2G07675	No alias	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
ATMG00980	RPSL2	Ribosomal protein S12/S23 family protein	0.05	OrthoFinder output from all 47 species
Cba_g12837	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Ceric.01G056200.1	Ceric.01G056200	not classified & original description: pacid=50592272...	0.03	OrthoFinder output from all 47 species
Ceric.06G028400.1	Ceric.06G028400	not classified & original description: pacid=50620499...	0.03	OrthoFinder output from all 47 species
Ceric.28G052500.1	Ceric.28G052500	not classified & original description: pacid=50569929...	0.05	OrthoFinder output from all 47 species
Dcu_g49424	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.1	OrthoFinder output from all 47 species
Solyc00g500254.1.1	RPL20, Solyc00g500254	50S ribosomal protein L20, chloroplastic OS=Coffea...	0.04	OrthoFinder output from all 47 species
Spa_g48002	No alias	component *(uS12m) of small mitoribosomal-subunit...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009579	thylakoid	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	82	135

External Links

No external refs found!

GSVIVT01002752001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation