LOC_Os11g38900 (Os11g0602200)


Aliases : Os11g0602200

Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. SU(VAR)3-9 homolog 1 (SUVH1)


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os11g38900
Cluster HCCA cluster: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
AT1G73100 SUVH3, SDG19 SU(VAR)3-9 homolog 3 0.01 Gene family
AT2G22740 SDG23, SUVH6 SU(VAR)3-9 homolog 6 0.01 Gene family
Cre02.g089200 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.01 Gene family
Cre07.g352600 No alias No description available 0.01 Gene family
MA_95753g0010 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Smo104841 PACid_15415085 No description available 0.02 Gene family
Solyc10g077070.2.1 Solyc10g077070.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001214 SET_dom 652 781
IPR003105 SRA_YDG 358 506
IPR007728 Pre-SET_dom 534 633
IPR017956 AT_hook_DNA-bd_motif 123 133
IPR017956 AT_hook_DNA-bd_motif 167 176
IPR017956 AT_hook_DNA-bd_motif 249 259
IPR017956 AT_hook_DNA-bd_motif 282 290
IPR017956 AT_hook_DNA-bd_motif 207 217
No external refs found!