1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01001045001

GSVIVT01001045001 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator complex.DRB7 component


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01001045001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00258500 ATDCL2, DCL2,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.05 OrthoFinder output from all 47 species
AT1G01040 DCL1, CAF,... dicer-like 1 0.05 OrthoFinder output from all 47 species
AT3G03300 ATDCL2, DCL2 dicer-like 2 0.04 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.08 OrthoFinder output from all 47 species
Adi_g017408 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.02 OrthoFinder output from all 47 species
Aev_g13800 DCL1, CAF,... endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ala_g13307 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Aspi01Gene32281.t1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.08 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ceric.1Z277300.1 DCL1, CAF,... not classified & original description: pacid=50600427... 0.11 OrthoFinder output from all 47 species
Ceric.22G041000.1 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.02 OrthoFinder output from all 47 species
Cre07.g345900 DCL1, CAF,... No description available 0.03 OrthoFinder output from all 47 species
Dcu_g08330 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g36083 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Ehy_g18573 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
LOC_Os01g68120.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.03 OrthoFinder output from all 47 species
Lfl_g06763 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
MA_10432726g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_118446g0010 ATDCL3, DCL3 Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Mp7g11720.1 DCL4, ATDCL4 endoribonuclease (DCL3). endoribonuclease (DCL4) 0.03 OrthoFinder output from all 47 species
Nbi_g25918 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Ore_g16091 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Pp3c2_15900V3.1 DCL1, CAF,... dicer-like 1 0.02 OrthoFinder output from all 47 species
Ppi_g29457 DCL4, ATDCL4 endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352 ATDCL3, DCL3 endoribonuclease (DCL2) of transacting siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Sam_g11612 No alias endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Smo444049 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Solyc03g053085.1.1 Solyc03g053085 Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g005030.4.1 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.04 OrthoFinder output from all 47 species
Solyc08g067210.3.1 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.05 OrthoFinder output from all 47 species
Tin_g25551 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Tin_g29214 DCL4, ATDCL4 endoribonuclease (DCL4) of transacTing siRNA pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e041209_P001 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 394 510
IPR000999 RNase_III_dom 1031 1158
IPR000999 RNase_III_dom 1234 1343
IPR014720 dsRBD_dom 1370 1433
IPR005034 Dicer_dimerisation_dom 576 659
IPR003100 PAZ_dom 868 988
IPR011545 DEAD/DEAH_box_helicase_dom 50 195
No external refs found!