GSVIVT01000821001 (PMH2, ATRH53)

Aliases : PMH2, ATRH53

Description : RNA processing.organelle machineries.RNA splicing.mitochondrial RNA splicing.group-II intron splicing.PMH RNA helicase

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01000821001
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00127820	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.04	OrthoFinder output from all 47 species
AT3G22310	PMH1, ATRH9	putative mitochondrial RNA helicase 1	0.05	OrthoFinder output from all 47 species
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.04	OrthoFinder output from all 47 species
AT5G62190	PRH75	DEAD box RNA helicase (PRH75)	0.04	OrthoFinder output from all 47 species
Adi_g023797	PMH1, ATRH9	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g054902	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g056600	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107957	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g10440	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ala_g14243	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g23186	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Als_g03195	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Als_g14234	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g08480	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0022.g016145	PRH75	not classified & original description: CDS=1-2178	0.03	OrthoFinder output from all 47 species
Azfi_s0052.g031680	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Azfi_s2641.g112487	emb1138	not classified & original description: CDS=202-2694	0.03	OrthoFinder output from all 47 species
Cba_g02044	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G054800.1	PRH75, Ceric.01G054800	not classified & original description: pacid=50590947...	0.03	OrthoFinder output from all 47 species
Ceric.21G051700.1	emb1138, Ceric.21G051700	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.151	emb1138	DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020734.25	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53, mitochondrial...	0.02	OrthoFinder output from all 47 species
Dac_g01008	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Dac_g02286	PRH75	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g04260	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Dde_g00876	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Ehy_g15362	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.05	OrthoFinder output from all 47 species
Ehy_g21458	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_10087	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
LOC_Os12g41715.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Len_g18992	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Lfl_g06681	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
MA_10206082g0010	PMH2, ATRH53	RNA helicase (PMH)	0.05	OrthoFinder output from all 47 species
MA_17924g0010	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
MA_17924g0020	PRH75	DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia...	0.03	OrthoFinder output from all 47 species
Msp_g22012	emb1138	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Ore_g07399	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Ore_g29256	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Ore_g38810	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16512	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017215	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Sam_g06711	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Solyc07g044760.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Solyc08g042050.3.1	emb1138, Solyc08g042050	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Tin_g08271	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.06	OrthoFinder output from all 47 species
Tin_g15128	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.03	OrthoFinder output from all 47 species
Zm00001e011716_P001	emb1138, Zm00001e011716	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
Zm00001e018107_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0033588	elongator holoenzyme complex	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	347	454
IPR011545	DEAD/DEAH_box_helicase_dom	139	308

External Links

No external refs found!

GSVIVT01000821001 (PMH2, ATRH53)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation