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  5. GSVIVT01000789001

GSVIVT01000789001


No description available


Gene families : OG0003716 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003716_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000789001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT1G06380 No alias Ribosomal protein L1p/L10e family 0.09 OrthoFinder output from all 47 species
AT2G42650 No alias Ribosomal protein L1p/L10e family 0.03 OrthoFinder output from all 47 species
AT3G58660 No alias Ribosomal protein L1p/L10e family 0.05 OrthoFinder output from all 47 species
Aop_g01055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g04400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.38G048300.1 Ceric.38G048300 not classified & original description: pacid=50580024... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021721.13 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre07.g314100 No alias No description available 0.13 OrthoFinder output from all 47 species
Gb_31610 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os05g48422.1 LOC_Os05g48422 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_173360g0010 No alias no hits & (original description: none) 0.13 OrthoFinder output from all 47 species
MA_550291g0010 No alias no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Mp1g11260.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Pp3c8_1610V3.1 Pp3c8_1610 Ribosomal protein L1p/L10e family 0.06 OrthoFinder output from all 47 species
Sam_g15613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g111420.3.1 Solyc01g111420 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Zm00001e026491_P001 Zm00001e026491 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e032390_P001 Zm00001e032390 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 52 252
No external refs found!