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  5. GSVIVT01000771001

GSVIVT01000771001


Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01000771001
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT4G17880 No alias Basic helix-loop-helix (bHLH) DNA-binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g080407 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g22120 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14107 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06378 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Gb_10001 ATMYC2, MYC2,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_28786 No alias transcription factor (bHLH) 0.05 OrthoFinder output from all 47 species
Gb_36294 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Len_g49188 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15105 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g42228 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08808 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g083980.3.1 Solyc06g083980 transcription factor (bHLH) 0.09 OrthoFinder output from all 47 species
Solyc08g076930.1.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Spa_g16758 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 309 355
IPR025610 MYC/MYB_N 50 220
No external refs found!