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  5. Solyc12g100330.2.1

Solyc12g100330.2.1 (CMT3, Solyc12g100330)


Aliases : CMT3, Solyc12g100330

Description : DNA chromomethylase (CMT)


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g100330.2.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.13 OrthoFinder output from all 47 species
AMTR_s00048p00181490 CMT2,... Chromatin organisation.DNA methylation.RNA-independent... 0.02 OrthoFinder output from all 47 species
AT1G69770 CMT3 chromomethylase 3 0.04 OrthoFinder output from all 47 species
Adi_g014234 CMT2 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g060185 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g089629 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30424 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g28229 CMT2 DNA chromomethylase *(CMT) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10939 CMT3 DNA chromomethylase *(CMT) & original description: none 0.11 OrthoFinder output from all 47 species
Aspi01Gene43679.t1 CMT3, Aspi01Gene43679 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0028.g023875 CMT3 DNA chromomethylase *(CMT) & original description: CDS=5-2743 0.05 OrthoFinder output from all 47 species
Ceric.12G007000.1 CMT3, Ceric.12G007000 DNA chromomethylase *(CMT) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.34G031800.1 CMT3, Ceric.34G031800 DNA chromomethylase *(CMT) & original description:... 0.06 OrthoFinder output from all 47 species
Dac_g12073 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g46826 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species
Dcu_g50047 CMT2 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01024446001 CMT2 Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
GSVIVT01025386001 CMT3 Chromatin organisation.DNA methylation.RNA-independent... 0.13 OrthoFinder output from all 47 species
GSVIVT01033464001 CMT1, DMT4 Chromatin organisation.DNA methylation.RNA-independent... 0.07 OrthoFinder output from all 47 species
Gb_13672 CMT3 DNA chromomethylase (CMT) 0.11 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.05 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
MA_173651g0010 CMT3 DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species
Mp6g08650.1 CMT3 DNA chromomethylase (CMT) 0.04 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g39436 CMT3 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.05 OrthoFinder output from all 47 species
Spa_g08555 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26095 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0008168 methyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR023780 Chromo_domain 485 539
IPR001525 C5_MeTfrase 550 899
IPR001025 BAH_dom 224 330
No external refs found!