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Aliases : Solyc12g099850
Description : Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana (sp|q0wn60|ppr48_arath : 472.0)
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00001p00272900 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00002p00268120 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At2g29760,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00126p00080460 | OTP82,... | Pentatricopeptide repeat-containing protein At1g08070,... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G09410 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G01580 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G02010 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT4G21300 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT5G09950 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g101227 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g21644 | OSB1 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g28189 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g46737 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06600 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11424 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g31200 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g03252 | OTP86 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05739 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05916 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06363 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g06887 | RARE1 | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g07140 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g09502 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g19283 | CRR2 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g22698 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g27948 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g30874 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g31156 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g55111 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g55221 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aob_g07904 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g19301 | OTP84 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27593 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27895 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g27914 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g37980 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g40270 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene34516.t1 | Aspi01Gene34516 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene45318.t1 | Aspi01Gene45318 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene57016.t1 | Aspi01Gene57016 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene60513.t1 | Aspi01Gene60513 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene70773.t1 | OTP84, Aspi01Gene70773 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene72317.t1 | Aspi01Gene72317 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0002.g001409 | No alias | not classified & original description: CDS=1-2469 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0005.g009143 | No alias | not classified & original description: CDS=1-4677 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0292.g063413 | VAC1, ECB2, ATECB2 | not classified & original description: CDS=1-2286 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g03412 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g05323 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g05963 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19308 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19911 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20848 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g29878 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g29935 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g29991 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g33742 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g34773 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g36324 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g45697 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g74667 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g75136 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g75137 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.04G059000.1 | Ceric.04G059000 | not classified & original description: pacid=50632212... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.05G087100.1 | Ceric.05G087100 | not classified & original description: pacid=50579181... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.15G051800.1 | VAC1, ECB2,... | not classified & original description: pacid=50639747... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.19G003900.1 | Ceric.19G003900 | not classified & original description: pacid=50575192... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z242100.1 | CRR22, Ceric.1Z242100 | not classified & original description: pacid=50573437... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.20G048700.1 | CRR22, Ceric.20G048700 | not classified & original description: pacid=50567179... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.31G066800.1 | Ceric.31G066800 | not classified & original description: pacid=50573808... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.32G057100.1 | Ceric.32G057100 | not classified & original description: pacid=50598475... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.37G044800.1 | Ceric.37G044800 | not classified & original description: pacid=50617007... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g18582 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g05274 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g05681 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06479 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06500 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07128 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g07711 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g07728 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g09222 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g17207 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g26485 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g35968 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g36076 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g40949 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g40960 | CRR2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g43173 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g47766 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g47945 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g21131 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01037258001 | No alias | Pentatricopeptide repeat-containing protein At5g27110... | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os01g08120.1 | OTP81, LOC_Os01g08120 | RNA editing factor (OTP81) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g74600.1 | CRR22, LOC_Os01g74600 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g44210.2 | LOC_Os03g44210 | RNA editing factor (SEL1/PDM1) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g56850.1 | LOC_Os03g56850 | Pentatricopeptide repeat-containing protein At4g21300... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g63510.1 | LOC_Os03g63510 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os05g05490.1 | LOC_Os05g05490 | Pentatricopeptide repeat-containing protein At3g05340... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g30710.1 | LOC_Os05g30710 | Pentatricopeptide repeat-containing protein At1g20230... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os06g12510.1 | LOC_Os06g12510 | Pentatricopeptide repeat-containing protein At5g15300... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g49185.1 | LOC_Os06g49185 | Pentatricopeptide repeat-containing protein At3g03580... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os07g44299.1 | OTP81, LOC_Os07g44299 | Pentatricopeptide repeat-containing protein At2g29760,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os09g24680.1 | LOC_Os09g24680 | Pentatricopeptide repeat-containing protein At1g74600,... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g04367 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g17579 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Len_g17998 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g19232 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g33779 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g54971 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06268 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06764 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07847 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g10880 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g11837 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430171g0010 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_117650g0010 | CRR22 | Pentatricopeptide repeat-containing protein At1g11290,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_179801g0020 | EMB2261 | Pentatricopeptide repeat-containing protein At4g02750... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g20156 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g23107 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g28757 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g28799 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g31456 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g33834 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g35976 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Msp_g41114 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g38632 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02979 | PTAC9, OSB2 | cofactor of plastid-encoded RNA polymerase *(TAC9) &... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g01995 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g11385 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g63645 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g04460 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g25269 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g28556 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g11096 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g18941 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53565 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59214 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0030.g010335 | No alias | not classified & original description: CDS=1-1296 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0033.g010995 | No alias | not classified & original description: CDS=1-2412 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0072.g016959 | No alias | not classified & original description: CDS=1-1596 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0093.g019124 | No alias | not classified & original description: CDS=1-405 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0151.g023411 | REME1 | not classified & original description: CDS=1-1494 | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0170.g024361 | OTP84 | cyclin-dependent kinase inhibitor *(KRP/ICK) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g50566 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo100621 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | OrthoFinder output from all 47 species | |
| Smo51483 | CRR22 | Pentatricopeptide repeat-containing protein At3g53360,... | 0.03 | OrthoFinder output from all 47 species | |
| Smo76175 | No alias | Pentatricopeptide repeat-containing protein At4g13650... | 0.03 | OrthoFinder output from all 47 species | |
| Smo99756 | No alias | Pentatricopeptide repeat-containing protein At2g39620... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc10g008590.1.1 | Solyc10g008590 | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g27577 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g47167 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g05539 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g16966 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g17629 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g20924 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Tin_g29210 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e015695_P001 | Zm00001e015695 | Pentatricopeptide repeat-containing protein At4g16835,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041694_P001 | Zm00001e041694 | Pentatricopeptide repeat-containing protein At5g16860... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 173 | 199 |
| IPR002885 | Pentatricopeptide_repeat | 201 | 227 |
| IPR002885 | Pentatricopeptide_repeat | 577 | 603 |
| IPR002885 | Pentatricopeptide_repeat | 640 | 670 |
| IPR002885 | Pentatricopeptide_repeat | 303 | 332 |
| IPR002885 | Pentatricopeptide_repeat | 275 | 301 |
| IPR002885 | Pentatricopeptide_repeat | 504 | 530 |
| IPR002885 | Pentatricopeptide_repeat | 376 | 403 |
| IPR002885 | Pentatricopeptide_repeat | 606 | 635 |
| IPR002885 | Pentatricopeptide_repeat | 746 | 771 |
| IPR002885 | Pentatricopeptide_repeat | 404 | 432 |
| No external refs found! |