Solyc12g099280.2.1 (FIP1[V], ATFIP1[V],...)


Aliases : FIP1[V], ATFIP1[V], FIPS5, ATFIPS5, Solyc12g099280

Description : FIP1[V]-like protein OS=Arabidopsis thaliana (sp|f4kdh9|fips5_arath : 89.0)


Gene families : OG0001918 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001918_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g099280.2.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00049560 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT3G66652 No alias fip1 motif-containing protein 0.08 OrthoFinder output from all 47 species
Aev_g14836 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g26393 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Aob_g32010 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Ceric.31G051000.1 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Dac_g10619 FIP1[V],... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13384 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01034996001 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g19570.1 FIP1[V],... FIP1[V]-like protein OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
LOC_Os03g51520.1 FIP1[V],... component Fip1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Lfl_g18347 FIP1[V],... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g24352 FIP1[V],... component *(Fip1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
MA_101689g0010 FIP1[V],... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_140047g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0217.g026078 FIP1[V],... not classified & original description: CDS=143-3523 0.03 OrthoFinder output from all 47 species
Zm00001e001458_P002 FIP1[V],... no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007854 Fip1_dom 192 234
No external refs found!