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  5. Solyc12g098490.2.1

Solyc12g098490.2.1 (SHM4, Solyc12g098490)


Aliases : SHM4, Solyc12g098490

Description : serine hydroxymethyltransferase. serine hydroxymethyltransferase


Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098490.2.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT4G13930 SHM4 serine hydroxymethyltransferase 4 0.04 OrthoFinder output from all 47 species
Aspi01Gene62554.t1 AtSHMT3, SHM3,... EC_2.1 transferase transferring one-carbon group &... 0.02 OrthoFinder output from all 47 species
Cre06.g293950 SHM4 Amino acid metabolism.biosynthesis.serine... 0.02 OrthoFinder output from all 47 species
Lfl_g01520 SHM4 EC_2.1 transferase transferring one-carbon group &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042030 ATPase inhibitor activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 13 411
No external refs found!