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  5. Solyc12g098180.3.1

Solyc12g098180.3.1 (VAMP726, ATVAMP726,...)


Aliases : VAMP726, ATVAMP726, Solyc12g098180

Description : R-SNARE component VAMP721/VAMP722 of SNARE cell-plate vesicle fusion complex. VAMP7-type R-type SNARE longin protein


Gene families : OG0000720 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000720_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g098180.3.1

Target Alias Description ECC score Gene Family Method Actions
AT2G33120 SAR1, ATVAMP722, VAMP722 synaptobrevin-related protein 1 0.02 OrthoFinder output from all 47 species
Aev_g08135 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene20964.t1 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene32347.t1 ATVAMP725,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Azfi_s0064.g035436 ATVAMP721,... non-SNARE-type phytolongin & original description: CDS=304-1083 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046179 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Dde_g21636 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Ehy_g02068 VAMP726, ATVAMP726 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Ehy_g06509 VAMP726, ATVAMP726 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
LOC_Os03g06960.1 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.07 OrthoFinder output from all 47 species
Len_g05152 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Lfl_g04524 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
MA_174857g0010 VAMP726, ATVAMP726 R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
Mp8g09990.1 ATVAMP721,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 OrthoFinder output from all 47 species
Ore_g01479 ATVAMP725, VAMP725 R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Pnu_g01930 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Pnu_g03767 ATVAMP721,... R-type VAMP7-group component of SNARE longin membrane... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023181 VAMP727, ATVAMP727 R-type VAMP7-group component of SNARE longin membrane... 0.03 OrthoFinder output from all 47 species
Solyc09g091610.3.1 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.04 OrthoFinder output from all 47 species
Zm00001e009585_P002 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 OrthoFinder output from all 47 species
Zm00001e011409_P003 ATVAMP725,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 OrthoFinder output from all 47 species
Zm00001e039018_P001 VAMP726,... R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR001388 Synaptobrevin-like 129 214
IPR010908 Longin_dom 32 111
No external refs found!