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  5. Solyc12g096190.2.1

Solyc12g096190.2.1 (TSBtype2, Solyc12g096190)


Aliases : TSBtype2, Solyc12g096190

Description : Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana (sp|p14671|trpb1_arath : 119.0)


Gene families : OG0004509 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004509_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g096190.2.1
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00265000 TSBtype2,... Tryptophan synthase beta chain 2, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ala_g07823 TSBtype2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene02308.t1 TSBtype2, Aspi01Gene02308 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036477001 TSBtype2 Tryptophan synthase beta chain 1, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os06g42560.4 TSBtype2, LOC_Os06g42560 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g19121 TSBtype2 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004470 malic enzyme activity IEP HCCA
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016615 malate dehydrogenase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001926 TrpB-like_PALP 115 453
No external refs found!