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  5. Solyc12g095890.2.1

Solyc12g095890.2.1 (PAP(IV), nPAP, Solyc12g095890)


Aliases : PAP(IV), nPAP, Solyc12g095890

Description : poly(A) RNA polymerase


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g095890.2.1

Target Alias Description ECC score Gene Family Method Actions
Cre10.g433750 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.01 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004725 protein tyrosine phosphatase activity IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR007010 PolA_pol_RNA-bd_dom 366 424
IPR007012 PolA_pol_cen_dom 19 362
IPR002934 Polymerase_NTP_transf_dom 92 167
No external refs found!