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  5. Solyc12g088980.2.1

Solyc12g088980.2.1 (Solyc12g088980)


Aliases : Solyc12g088980

Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 494.0)


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g088980.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00162370 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G26490 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G50390 No alias Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aspi01Gene72933.t1 Aspi01Gene72933 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s3305.g115285 No alias not classified & original description: CDS=1-1707 0.02 OrthoFinder output from all 47 species
Ceric.15G069400.1 Ceric.15G069400 not classified & original description: pacid=50639526... 0.05 OrthoFinder output from all 47 species
GSVIVT01007825001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Gb_27340 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g13140.1 LOC_Os01g13140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52870.1 LOC_Os03g52870 Protein JINGUBANG OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ppi_g56732 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g090150.1.1 Solyc02g090150 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 179 208
IPR001680 WD40_repeat 70 96
IPR001680 WD40_repeat 214 249
IPR001680 WD40_repeat 111 134
IPR001680 WD40_repeat 347 392
IPR001680 WD40_repeat 307 339
IPR001680 WD40_repeat 263 297
No external refs found!