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  5. Solyc12g088720.2.1

Solyc12g088720.2.1 (PAB2, PABP2, ATPAB2,...)


Aliases : PAB2, PABP2, ATPAB2, Solyc12g088720

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc12g088720.2.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT1G49760 PAB8, PABP8 poly(A) binding protein 8 0.04 OrthoFinder output from all 47 species
AT2G23350 PABP4, PAB4 poly(A) binding protein 4 0.03 OrthoFinder output from all 47 species
AT3G19350 MPC maternally expressed pab C-terminal 0.02 OrthoFinder output from all 47 species
Adi_g088081 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088556 PABP4, PAB4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112648 PAB2, PABP2, ATPAB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112649 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Als_g23246 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02222 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Aop_g05955 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.06 OrthoFinder output from all 47 species
Aop_g13336 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0060.g034731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.05 OrthoFinder output from all 47 species
Cba_g10012 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Cba_g29520 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ceric.34G008600.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Ceric.36G019600.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ceric.37G012300.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.28 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.04 OrthoFinder output from all 47 species
Cre01.g039300 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.04 OrthoFinder output from all 47 species
Ehy_g07029 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g07805 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01022079001 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.04 OrthoFinder output from all 47 species
Gb_00731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
LOC_Os09g02700.1 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
MA_111003g0010 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.04 OrthoFinder output from all 47 species
Mp7g18970.1 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.05 OrthoFinder output from all 47 species
Nbi_g04354 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g14035 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ore_g17615 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Pir_g04520 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Pir_g19320 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Pir_g32380 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g31375 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023696 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Spa_g26485 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 226 294
IPR000504 RRM_dom 329 397
IPR000504 RRM_dom 47 117
IPR000504 RRM_dom 135 203
IPR002004 PABP_HYD 575 641
No external refs found!