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  5. Solyc12g062550.1.1

Solyc12g062550.1.1 (RBCL, Solyc12g062550)


Aliases : RBCL, Solyc12g062550

Description : Ribulose bisphosphate carboxylase large chain OS=Solanum lycopersicum (sp|p27065|rbl_sollc : 181.0)


Gene families : OG0002607 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g062550.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272640 evm_27.TU.AmTr_v1... Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba 0.01 OrthoFinder output from all 47 species
AMTR_s00012p00184400 RBCL,... Ribulose bisphosphate carboxylase large chain... 0.01 OrthoFinder output from all 47 species
AMTR_s00606p00006850 RBCL,... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.01 OrthoFinder output from all 47 species
ATCG00490 RBCL ribulose-bisphosphate carboxylases 0.04 OrthoFinder output from all 47 species
Aev_g01070 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Als_g11735 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Cba_g06423 RBCL large subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Ceric.11G075000.1 RBCL, Ceric.11G075000 not classified & original description: pacid=50595488... 0.07 OrthoFinder output from all 47 species
Ceric.29G033400.1 RBCL, Ceric.29G033400 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ceric.35G017400.1 RBCL, Ceric.35G017400 not classified & original description: pacid=50581736... 0.08 OrthoFinder output from all 47 species
Ceric.38G006500.1 RBCL, Ceric.38G006500 large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Dac_g03296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Dcu_g16071 RBCL large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Dde_g00694 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
GSVIVT01013856001 RBCL Ribulose bisphosphate carboxylase large chain (Fragment)... 0.01 OrthoFinder output from all 47 species
GSVIVT01022403001 RBCL Ribulose bisphosphate carboxylase large chain OS=Sesbania sesban 0.01 OrthoFinder output from all 47 species
Gb_07644 RBCL Ribulose bisphosphate carboxylase large chain... 0.01 OrthoFinder output from all 47 species
Gb_15502 RBCL Ribulose bisphosphate carboxylase large chain... 0.01 OrthoFinder output from all 47 species
Gb_34523 No alias Ribulose bisphosphate carboxylase large chain (Fragment)... 0.1 OrthoFinder output from all 47 species
Gb_37464 RBCL Ribulose bisphosphate carboxylase large chain... 0.01 OrthoFinder output from all 47 species
LOC_Os01g58020.1 RBCL, LOC_Os01g58020 Ribulose bisphosphate carboxylase large chain OS=Oryza... 0.06 OrthoFinder output from all 47 species
LOC_Os10g21268.1 RBCL, LOC_Os10g21268 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
LOC_Os12g10580.1 RBCL, LOC_Os12g10580 component psRPS15 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Len_g01809 RBCL large subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Lfl_g07296 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Msp_g16802 RBCL large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ore_g01544 RBCL large subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ppi_g08990 RBCL large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002257 RBCL not classified & original description: CDS=1-450 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0313.g027218 RBCL not classified & original description: CDS=1-270 0.01 OrthoFinder output from all 47 species
Sam_g02085 No alias large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Smo137874 RBCL Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Solyc00g500063.1.1 RBCL, Solyc00g500063 large subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Solyc04g039840.1.1 RBCL, Solyc04g039840 Ribulose bisphosphate carboxylase large chain OS=Vigna... 0.04 OrthoFinder output from all 47 species
Solyc07g021200.1.1 RBCL, Solyc07g021200 Ribulose bisphosphate carboxylase large chain (Fragment)... 0.03 OrthoFinder output from all 47 species
Zm00001e031080_P001 RBCL, Zm00001e031080 Ribulose bisphosphate carboxylase large chain OS=Zea... 0.08 OrthoFinder output from all 47 species
Zm00001e042029_P001 RBCL, Zm00001e042029 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Zm00001e042051_P001 RBCL, Zm00001e042051 large subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Zm00001e042083_P001 RBCL, Zm00001e042083 large subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Zm00001e042095_P001 RBCL, Zm00001e042095 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Zm00001e042403_P001 RBCL, Zm00001e042403 large subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000685 RuBisCO_lsu_C 1 101
No external refs found!