1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g062290.2.1

Solyc12g062290.2.1 (DegP9, Solyc12g062290)


Aliases : DegP9, Solyc12g062290

Description : protease (Deg)


Gene families : OG0000580 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000580_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g062290.2.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Adi_g025739 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22832.t1 DegP10, Aspi01Gene22832 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22833.t1 DegP10, Aspi01Gene22833 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032512001 DegP9 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50880.1 DegP9, LOC_Os02g50880 protease (Deg) 0.03 OrthoFinder output from all 47 species
Lfl_g10202 DegP10 protease *(Deg) & original description: none 0.04 OrthoFinder output from all 47 species
MA_176437g0010 DegP10 protease (Deg) 0.04 OrthoFinder output from all 47 species
MA_7242206g0010 DegP10 protease (Deg) 0.03 OrthoFinder output from all 47 species
Spa_g09027 DegP10 protease *(Deg) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e031683_P001 DegP10, Zm00001e031683 protease (Deg) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001478 PDZ 341 427
IPR041517 DEGP_PDZ 434 579
No external refs found!