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  5. Solyc12g056570.1.1

Solyc12g056570.1.1 (Solyc12g056570)


Aliases : Solyc12g056570

Description : UPF0496 protein At3g49070 OS=Arabidopsis thaliana (sp|q9smu4|u496n_arath : 115.0)


Gene families : OG0003701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003701_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g056570.1.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00067520 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT1G20180 No alias Protein of unknown function (DUF677) 0.05 OrthoFinder output from all 47 species
Cba_g10963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009973001 No alias UPF0496 protein At1g20180 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00671 No alias UPF0496 protein At3g49070 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_12696 No alias UPF0496 protein At3g19330 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g38839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g04213 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g34570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g24792 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000385_P002 Zm00001e000385 UPF0496 protein 3 OS=Oryza sativa subsp. indica... 0.01 OrthoFinder output from all 47 species
Zm00001e013297_P001 Zm00001e013297 Putative UPF0496 protein 2 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
MF GO:0016289 CoA hydrolase activity IEP HCCA
MF GO:0016790 thiolester hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR007749 DUF677 49 346
No external refs found!