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  5. Solyc12g049320.3.1

Solyc12g049320.3.1 (Solyc12g049320)


Aliases : Solyc12g049320

Description : Nodulation-signaling pathway 1 protein OS=Medicago truncatula (sp|q4vyc8|nsp1_medtr : 126.0)


Gene families : OG0006144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g049320.3.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Adi_g080510 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
GSVIVT01016753001 No alias External stimuli response.biotic... 0.04 OrthoFinder output from all 47 species
LOC_Os03g29480.1 LOC_Os03g29480 transcription factor (GRAS). component NSP1 of NSP1-NSP2... 0.04 OrthoFinder output from all 47 species
Ore_g20848 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.04 OrthoFinder output from all 47 species
Spa_g33267 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Tin_g41208 No alias component *(NSP1) of NSP1-NSP2 nodulation initiation... 0.02 OrthoFinder output from all 47 species
Zm00001e001953_P001 Zm00001e001953 transcription factor (GRAS). component NSP1 of NSP1-NSP2... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005199 structural constituent of cell wall IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008131 primary amine oxidase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0048038 quinone binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR005202 TF_GRAS 159 251
No external refs found!