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  5. Solyc12g044860.3.1

Solyc12g044860.3.1 (Solyc12g044860)


Aliases : Solyc12g044860

Description : DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana (sp|q9c718|rh20_arath : 694.0)


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g044860.3.1

Target Alias Description ECC score Gene Family Method Actions
No aliasAT3G06480 No alias DEAD box RNA helicase family protein 0.04 OrthoFinder output from all 47 species
Adi_g057398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g14759 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63146.t1 ATDRH1, DRH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G038500.1 Ceric.21G038500 regulatory RNA helicase *(RH20/RH30) of virus... 0.04 OrthoFinder output from all 47 species
Dac_g12501 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g12670 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Dcu_g10539 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25686 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Dcu_g41933 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.04 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20062 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os01g10050.2 LOC_Os01g10050 pre-mRNA splicing regulator (DDX5) 0.04 OrthoFinder output from all 47 species
LOC_Os01g36860.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
LOC_Os01g68320.2 LOC_Os01g68320 pre-mRNA splicing regulator (DDX5) 0.03 OrthoFinder output from all 47 species
LOC_Os11g46240.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g14109 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g13618 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species
Nbi_g12055 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.01 OrthoFinder output from all 47 species
Ore_g34158 ATDRH1, DRH1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g15938 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57014 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020727_P006 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e020972_P005 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008318 protein prenyltransferase activity IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0018342 protein prenylation IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0097354 prenylation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 120 286
IPR001650 Helicase_C 305 414
No external refs found!