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  5. Solyc12g044320.2.1

Solyc12g044320.2.1 (Solyc12g044320)


Aliases : Solyc12g044320

Description : Protein JINGUBANG OS=Arabidopsis thaliana (sp|o48716|jgb_arath : 219.0)


Gene families : OG0000309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g044320.2.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00135240 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
AMTR_s00156p00066850 evm_27.TU.AmTr_v1... Protein JINGUBANG OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
AT5G50120 No alias Transducin/WD40 repeat-like superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g00841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24032 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25514 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene72932.t1 Aspi01Gene72932 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72933.t1 Aspi01Gene72933 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35395 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g17369 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01007589001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01035639001 No alias Protein JINGUBANG OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_26404 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_33494 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Gb_33498 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os01g13140.1 LOC_Os01g13140 Protein JINGUBANG OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_10429180g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431396g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431396g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_107471g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_28858g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_3692384g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_370291g0010 No alias Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Nbi_g13294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17260 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g08501 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g60508 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Solyc04g005020.3.1 Solyc04g005020 Protein JINGUBANG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g44621 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g48688 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13772 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015781_P001 Zm00001e015781 Protein JINGUBANG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 385 428
IPR001680 WD40_repeat 345 374
IPR001680 WD40_repeat 213 241
IPR001680 WD40_repeat 247 282
No external refs found!