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  5. Solyc12g043100.2.1

Solyc12g043100.2.1 (Solyc12g043100)


Aliases : Solyc12g043100

Description : group-II intron mitochondrial splicing factor (MISF68)


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g043100.2.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00236380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g61360... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
AT1G02420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G80550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G61360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g01020 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07362 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15135 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g01835 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g26096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene14737.t1 EMB2261, Aspi01Gene14737 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g10252 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.03 OrthoFinder output from all 47 species
Dcu_g01694 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g04707 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g32634 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g07270 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18713 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01022794001 No alias Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 OrthoFinder output from all 47 species
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 OrthoFinder output from all 47 species
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
Gb_20376 No alias group-II intron mitochondrial splicing factor (MISF68) 0.04 OrthoFinder output from all 47 species
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 OrthoFinder output from all 47 species
Gb_31888 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.02 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g51840.1 LOC_Os03g51840 Pentatricopeptide repeat-containing protein At3g49730... 0.04 OrthoFinder output from all 47 species
MA_10430437g0020 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
MA_38485g0010 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.03 OrthoFinder output from all 47 species
MA_455059g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g08820 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g01378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0055.g014467 No alias not classified & original description: CDS=1-2058 0.03 OrthoFinder output from all 47 species
Solyc04g076370.4.1 Solyc04g076370 Pentatricopeptide repeat-containing protein At2g27800,... 0.03 OrthoFinder output from all 47 species
Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g02821 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 506
IPR002885 Pentatricopeptide_repeat 442 469
IPR002885 Pentatricopeptide_repeat 508 557
IPR002885 Pentatricopeptide_repeat 191 241
IPR002885 Pentatricopeptide_repeat 578 624
IPR002885 Pentatricopeptide_repeat 367 417
IPR002885 Pentatricopeptide_repeat 264 310
IPR002885 Pentatricopeptide_repeat 328 361
No external refs found!