1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g042060.3.1

Solyc12g042060.3.1 (HSP93-V, DCA1,...)


Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, Solyc12g042060

Description : chaperone component ClpC of chloroplast Clp-type protease complex


Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g042060.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00164160 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.09 OrthoFinder output from all 47 species
AMTR_s00110p00042430 CLPB3, CLPB-P,... External stimuli response.temperature.Hsp... 0.07 OrthoFinder output from all 47 species
AT5G50920 HSP93-V, DCA1,... CLPC homologue 1 0.13 OrthoFinder output from all 47 species
Adi_g001206 ATHSP101, HOT1, HSP101 cytosolic chaperone *(Hsp101) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g010878 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g088541 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Aev_g28850 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Ala_g11691 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ala_g12182 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g16086 HSP93-V, DCA1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47842 HSP93-V, DCA1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06718 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Aob_g07406 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Aob_g16301 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Aop_g08864 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Aop_g16852 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ceric.07G005700.1 CLPB3, CLPB-P,... organellar chaperone *(Clp-p/Clp-m) & original... 0.05 OrthoFinder output from all 47 species
Ceric.15G073100.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Cre02.g143307 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre43.g760497 HSP93-V, DCA1,... Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dac_g23824 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Dcu_g03157 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Dcu_g08738 HSP93-V, DCA1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g14360 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Dde_g24879 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ehy_g21280 HSP93-V, DCA1,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01008635001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01008636001 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.07 OrthoFinder output from all 47 species
Gb_20703 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.05 OrthoFinder output from all 47 species
LOC_Os04g32560.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.08 OrthoFinder output from all 47 species
LOC_Os12g12850.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.03 OrthoFinder output from all 47 species
Lfl_g07411 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
MA_1160713g0010 HSP93-V, DCA1,... ATP-dependent Clp protease ATP-binding subunit ClpA... 0.03 OrthoFinder output from all 47 species
MA_229920g0010 CLPB3, CLPB-P, APG6 Chaperone protein ClpB2, chloroplastic OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
MA_596288g0010 HSP93-V, DCA1,... Chaperone protein ClpC1, chloroplastic OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
MA_8117g0010 HSP93-V, DCA1,... ATP-dependent Clp protease ATP-binding subunit ClpA... 0.06 OrthoFinder output from all 47 species
Mp1g02560.1 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.05 OrthoFinder output from all 47 species
Msp_g05637 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Msp_g23938 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ore_g13933 HSP93-V, DCA1,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29985 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.06 OrthoFinder output from all 47 species
Pir_g11806 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Pir_g16593 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g10514 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Pnu_g23962 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g33462 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009790 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Sam_g16601 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Sam_g16602 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Sam_g17391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19448 No alias organellar chaperone *(Clp-p/Clp-m) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g42976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo439163 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.04 OrthoFinder output from all 47 species
Spa_g19032 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.05 OrthoFinder output from all 47 species
Spa_g38742 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Spa_g46302 CLPB3, CLPB-P, APG6 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g47608 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.07 OrthoFinder output from all 47 species
Zm00001e008312_P001 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.06 OrthoFinder output from all 47 species
Zm00001e040778_P001 HSP93-V, DCA1,... chaperone component ClpC of chloroplast Clp-type protease complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0004325 ferrochelatase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006783 heme biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 106 158
IPR004176 Clp_R_dom 182 233
IPR003959 ATPase_AAA_core 297 413
IPR041546 ClpA/ClpB_AAA_lid 435 536
IPR003959 ATPase_AAA_core 634 808
IPR019489 Clp_ATPase_C 815 895
No external refs found!