1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g038980.2.1

Solyc12g038980.2.1 (Solyc12g038980)


Aliases : Solyc12g038980

Description : protein factor NHP2L1/SNU13 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0004004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004004_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g038980.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00261410 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT5G08180 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.25 OrthoFinder output from all 47 species
Aob_g12373 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Aop_g00171 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.08 OrthoFinder output from all 47 species
Aspi01Gene31865.t1 Aspi01Gene31865 core component *(NHP2) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Azfi_s0078.g038143 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Ceric.08G019800.1 Ceric.08G019800 core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Cre16.g690500 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
GSVIVT01008187001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.14 OrthoFinder output from all 47 species
Gb_26398 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os06g16290.1 LOC_Os06g16290 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.24 OrthoFinder output from all 47 species
MA_670271g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
MA_99460g0010 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.12 OrthoFinder output from all 47 species
Mp8g07360.1 No alias protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.06 OrthoFinder output from all 47 species
Msp_g06354 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.09 OrthoFinder output from all 47 species
Pp3c15_25080V3.1 Pp3c15_25080 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.02 OrthoFinder output from all 47 species
Sam_g02663 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Sam_g41572 No alias core component *(NHP2) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Smo98161 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.1 OrthoFinder output from all 47 species
Zm00001e015712_P001 Zm00001e015712 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species
Zm00001e023454_P001 Zm00001e023454 protein factor NHP2L1/SNU13 of U4/U6 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 36 122
No external refs found!