Solyc12g038080.1.1 (PSBC, Solyc12g038080)

Aliases : PSBC, Solyc12g038080

Description : Photosystem II CP43 reaction center protein OS=Nicotiana tabacum (sp|p06413|psbc_tobac : 142.0)

Gene families : OG0003214 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003214_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g038080.1.1

Target	Alias	Description	ECC score	Gene Family Method
ATCG00280	PSBC	photosystem II reaction center protein C	0.03	OrthoFinder output from all 47 species
Aev_g04878	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Aob_g06735	PSBC	component *(PsbC/CP43) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Ceric.02G013100.1	PSBC, Ceric.02G013100	component *(PsbC/CP43) of PS-II reaction center complex...	0.05	OrthoFinder output from all 47 species
Ceric.12G087100.1	PSBC, Ceric.12G087100	not classified & original description: pacid=50602384...	0.06	OrthoFinder output from all 47 species
Ceric.24G024100.1	PSBC, Ceric.24G024100	component *(PsbC/CP43) of PS-II reaction center complex...	0.07	OrthoFinder output from all 47 species
Ceric.33G053900.1	PSBC, Ceric.33G053900	not classified & original description: pacid=50607717...	0.07	OrthoFinder output from all 47 species
Ceric.38G009700.1	PSBC, Ceric.38G009700	component *(PsbC/CP43) of PS-II reaction center complex...	0.05	OrthoFinder output from all 47 species
LOC_Os02g24632.1	PSBC, LOC_Os02g24632	component PsbC/CP43 of PS-II reaction center complex	0.04	OrthoFinder output from all 47 species
LOC_Os04g16874.1	PSBC, LOC_Os04g16874	component PsbC/CP43 of PS-II reaction center complex	0.04	OrthoFinder output from all 47 species
LOC_Os10g21212.1	PSBC, LOC_Os10g21212	component PsbC/CP43 of PS-II reaction center complex	0.04	OrthoFinder output from all 47 species
Solyc10g047410.1.1	PSBC, Solyc10g047410	Photosystem II CP43 reaction center protein OS=Atropa...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	Interproscan
BP	GO:0009767	photosynthetic electron transport chain	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016168	chlorophyll binding	IEA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	IEA	Interproscan
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009539	photosystem II reaction center	IEP	HCCA
BP	GO:0010109	regulation of photosynthesis	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	HCCA
BP	GO:0042549	photosystem II stabilization	IEP	HCCA
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	31	72

External Links

No external refs found!

Solyc12g038080.1.1 (PSBC, Solyc12g038080)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation