Solyc12g017860.3.1 (HEN2, Solyc12g017860)

Aliases : HEN2, Solyc12g017860

Description : RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex

Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g017860.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00200390	HEN2,...	RNA processing.RNA decay.exosome complex.associated...	0.04	OrthoFinder output from all 47 species
AMTR_s00029p00206820	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.05	OrthoFinder output from all 47 species
AT2G06990	HEN2	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.04	OrthoFinder output from all 47 species
AT3G46960	No alias	RNA helicase, ATP-dependent, SK12/DOB1 protein	0.04	OrthoFinder output from all 47 species
Adi_g006436	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g022453	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.05	OrthoFinder output from all 47 species
Adi_g112367	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Aev_g01540	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Aev_g17654	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Ala_g07168	No alias	group-II intron splicing RNA helicase *(ISE2) & original...	0.03	OrthoFinder output from all 47 species
Ala_g07737	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.05	OrthoFinder output from all 47 species
Ala_g07801	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.05	OrthoFinder output from all 47 species
Als_g01202	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Aob_g06073	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Aob_g12480	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Aop_g27842	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Azfi_s0027.g023708	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Azfi_s0100.g044290	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species
Ceric.08G061100.1	HEN2, Ceric.08G061100	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.06	OrthoFinder output from all 47 species
Ceric.15G051600.1	Ceric.15G051600	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.05	OrthoFinder output from all 47 species
Cre11.g482483	No alias	RNA processing.RNA decay.exosome complex.associated...	0.01	OrthoFinder output from all 47 species
Dac_g23858	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.03	OrthoFinder output from all 47 species
Dcu_g03136	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Dcu_g18967	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.06	OrthoFinder output from all 47 species
Dde_g31250	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.04	OrthoFinder output from all 47 species
GSVIVT01024809001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01032255001	HEN2	RNA processing.RNA decay.exosome complex.associated...	0.07	OrthoFinder output from all 47 species
GSVIVT01037437001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
LOC_Os02g06500.1	LOC_Os02g06500	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.06	OrthoFinder output from all 47 species
LOC_Os11g07500.1	HEN2, LOC_Os11g07500	RNA helicase component MTR4/HEN2 of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Len_g20478	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Len_g22463	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.04	OrthoFinder output from all 47 species
Len_g58854	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Lfl_g02309	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.02	OrthoFinder output from all 47 species
Lfl_g38626	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.04	OrthoFinder output from all 47 species
MA_10437094g0010	No alias	DExH-box ATP-dependent RNA helicase DExH11...	0.04	OrthoFinder output from all 47 species
MA_10437134g0010	No alias	DExH-box ATP-dependent RNA helicase DExH11...	0.03	OrthoFinder output from all 47 species
Mp1g05510.1	No alias	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.02	OrthoFinder output from all 47 species
Msp_g15177	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Msp_g19222	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Nbi_g03153	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Nbi_g03203	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Ppi_g12955	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.03	OrthoFinder output from all 47 species
Ppi_g57471	HEN2	RNA helicase component *(HEN2) of Nuclear Exosome...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0205.g025703	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.03	OrthoFinder output from all 47 species
Sam_g10538	No alias	RNA helicase component *(HEN2) of Nuclear Exosome...	0.03	OrthoFinder output from all 47 species
Sam_g14012	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.04	OrthoFinder output from all 47 species
Spa_g08781	No alias	RNA helicase component *(MTR4) of TRAMP nucleolar...	0.02	OrthoFinder output from all 47 species
Spa_g11434	No alias	RNA helicase component *(SKI2) of SUPERKILLER regulation...	0.02	OrthoFinder output from all 47 species
Zm00001e013693_P002	Zm00001e013693	RNA helicase component SKI2 of SUPERKILLER (SKI)...	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
CC	GO:0016459	myosin complex	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025696	rRNA_proc-arch_dom	474	737
IPR011545	DEAD/DEAH_box_helicase_dom	34	174
IPR001650	Helicase_C	331	418
IPR012961	Ski2/MTR4_C	765	935

External Links

No external refs found!

Solyc12g017860.3.1 (HEN2, Solyc12g017860)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation