Aliases : HEN2, Solyc12g017860
Description : RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex
Gene families : OG0000709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000709_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00025p00200390 | HEN2,... | RNA processing.RNA decay.exosome complex.associated... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00029p00206820 | evm_27.TU.AmTr_v1... | RNA processing.RNA decay.exosome complex.associated... | 0.05 | OrthoFinder output from all 47 species | |
AT2G06990 | HEN2 | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.04 | OrthoFinder output from all 47 species | |
AT3G46960 | No alias | RNA helicase, ATP-dependent, SK12/DOB1 protein | 0.04 | OrthoFinder output from all 47 species | |
Adi_g006436 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g022453 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.05 | OrthoFinder output from all 47 species | |
Adi_g112367 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g01540 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g17654 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g07168 | No alias | group-II intron splicing RNA helicase *(ISE2) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g07737 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.05 | OrthoFinder output from all 47 species | |
Ala_g07801 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.05 | OrthoFinder output from all 47 species | |
Als_g01202 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g06073 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g12480 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g27842 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0027.g023708 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0100.g044290 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.08G061100.1 | HEN2, Ceric.08G061100 | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.15G051600.1 | Ceric.15G051600 | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.05 | OrthoFinder output from all 47 species | |
Cre11.g482483 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g23858 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g03136 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g18967 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.06 | OrthoFinder output from all 47 species | |
Dde_g31250 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01024809001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01032255001 | HEN2 | RNA processing.RNA decay.exosome complex.associated... | 0.07 | OrthoFinder output from all 47 species | |
GSVIVT01037437001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g06500.1 | LOC_Os02g06500 | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os11g07500.1 | HEN2, LOC_Os11g07500 | RNA helicase component MTR4/HEN2 of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Len_g20478 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Len_g22463 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.04 | OrthoFinder output from all 47 species | |
Len_g58854 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g02309 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g38626 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
MA_10437094g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH11... | 0.04 | OrthoFinder output from all 47 species | |
MA_10437134g0010 | No alias | DExH-box ATP-dependent RNA helicase DExH11... | 0.03 | OrthoFinder output from all 47 species | |
Mp1g05510.1 | No alias | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g15177 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Msp_g19222 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g03153 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g03203 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g12955 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g57471 | HEN2 | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0205.g025703 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g10538 | No alias | RNA helicase component *(HEN2) of Nuclear Exosome... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g14012 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g08781 | No alias | RNA helicase component *(MTR4) of TRAMP nucleolar... | 0.02 | OrthoFinder output from all 47 species | |
Spa_g11434 | No alias | RNA helicase component *(SKI2) of SUPERKILLER regulation... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e013693_P002 | Zm00001e013693 | RNA helicase component SKI2 of SUPERKILLER (SKI)... | 0.1 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000723 | telomere maintenance | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
MF | GO:0003774 | cytoskeletal motor activity | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | HCCA |
MF | GO:0004386 | helicase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008270 | zinc ion binding | IEP | HCCA |
MF | GO:0015631 | tubulin binding | IEP | HCCA |
CC | GO:0016459 | myosin complex | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
BP | GO:0032200 | telomere organization | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0043015 | gamma-tubulin binding | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No external refs found! |