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Aliases : Solyc12g017260
Description : mRNA decay factor (PAT1)
Gene families : OG0002686 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002686_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00155p00028780 | evm_27.TU.AmTr_v1... | Protein PAT1 homolog OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
| AT1G79090 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.11 | OrthoFinder output from all 47 species | |
| Adi_g016377 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11197 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene21282.t1 | Aspi01Gene21282 | mRNA decay factor *(PAT1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.32G051000.1 | Ceric.32G051000 | mRNA decay factor *(PAT1) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Cre06.g278203 | No alias | No description available | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01015721001 | No alias | Protein PAT1 homolog 1 OS=Arabidopsis thaliana | 0.08 | OrthoFinder output from all 47 species | |
| GSVIVT01020437001 | No alias | No description available | 0.05 | OrthoFinder output from all 47 species | |
| Gb_01548 | No alias | mRNA decay factor (PAT1) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g12300 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| MA_10426858g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g14040.1 | No alias | mRNA decay factor (PAT1) | 0.05 | OrthoFinder output from all 47 species | |
| Nbi_g16038 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19688 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13549 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13550 | No alias | mRNA decay factor *(PAT1) & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |