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  5. Solyc12g015800.2.1

Solyc12g015800.2.1 (Solyc12g015800)


Aliases : Solyc12g015800

Description : RING-H2-class E3 ligase


Gene families : OG0001028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001028_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g015800.2.1
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
AT4G26580 No alias RING/U-box superfamily protein 0.25 OrthoFinder output from all 47 species
Adi_g056482 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21889 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene31240.t1 Aspi01Gene31240 E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene45051.t1 Aspi01Gene45051 E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08695 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g10536 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19869 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g13156 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01014737001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.23 OrthoFinder output from all 47 species
Gb_26029 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Len_g56731 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_105489g0010 No alias RING-H2-class E3 ligase 0.08 OrthoFinder output from all 47 species
Msp_g03890 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g43247 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02260 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14414 No alias E3 ubiquitin ligase *(DRR1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13870 No alias E3 ubiquiTin ligase *(DRR1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e020043_P002 Zm00001e020043 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0008064 regulation of actin polymerization or depolymerization IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0030832 regulation of actin filament length IEP HCCA
BP GO:0030833 regulation of actin filament polymerization IEP HCCA
BP GO:0032271 regulation of protein polymerization IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0032956 regulation of actin cytoskeleton organization IEP HCCA
BP GO:0032970 regulation of actin filament-based process IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034314 Arp2/3 complex-mediated actin nucleation IEP HCCA
BP GO:0043254 regulation of protein-containing complex assembly IEP HCCA
BP GO:0044087 regulation of cellular component biogenesis IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
BP GO:0110053 regulation of actin filament organization IEP HCCA
BP GO:1902903 regulation of supramolecular fiber organization IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 311 353
No external refs found!