LOC_Os03g61560.1


Description : APUM24 rRNA processing factor involved in ITS2 rRNA removal


Gene families : OG_01_0005051 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005051_tree ,
OG_02_0007281 (LandPlants) Phylogenetic Tree(s): OG_02_0007281_tree ,
OG_03_0007950 (SeedPlants) Phylogenetic Tree(s): OG_03_0007950_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g61560.1
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00139120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
AT3G16810 APUM24, PUM24 pumilio 24 0.23 Archaeplastida
Cpa|evm.model.tig00000615.61 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Cre12.g528950 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 Archaeplastida
GSVIVT01035090001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
Gb_02879 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 Archaeplastida
MA_80959g0020 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9586059g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.09 Archaeplastida
Mp7g01710.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.14 Archaeplastida
Pp3c5_10580V3.1 No alias pumilio 24 0.07 Archaeplastida
Solyc01g065580.4.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.17 Archaeplastida
Zm00001e006271_P002 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.13 Archaeplastida
AMTR_s00003p00139120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 LandPlants
AT3G16810 APUM24, PUM24 pumilio 24 0.2 LandPlants
GSVIVT01035090001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 LandPlants
Gb_02879 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 LandPlants
MA_9586059g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.07 LandPlants
Mp7g01710.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.13 LandPlants
Pp3c5_10580V3.1 No alias pumilio 24 0.07 LandPlants
Solyc01g065580.4.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.16 LandPlants
Zm00001e006271_P002 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.12 LandPlants
AMTR_s00003p00139120 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 SeedPlants
AT3G16810 APUM24, PUM24 pumilio 24 0.2 SeedPlants
GSVIVT01035090001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 SeedPlants
Gb_02879 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.03 SeedPlants
MA_9586059g0010 No alias Pumilio homolog 24 OS=Arabidopsis thaliana... 0.07 SeedPlants
Solyc01g065580.4.1 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.16 SeedPlants
Zm00001e006271_P002 No alias APUM24 rRNA processing factor involved in ITS2 rRNA removal 0.12 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012959 CPL_dom 487 591
No external refs found!