Solyc12g008420.3.1 (Solyc12g008420)

Aliases : Solyc12g008420

Description : Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana (sp|o82188|rdr5_arath : 488.0)

Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g008420.3.1
Cluster	HCCA: Cluster_45

Target	Alias	Description	ECC score	Gene Family Method
AT2G19910	No alias	RNA-dependent RNA polymerase family protein	0.06	OrthoFinder output from all 47 species
AT2G19920	No alias	RNA-dependent RNA polymerase family protein	0.05	OrthoFinder output from all 47 species
Ala_g22284	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12869	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15431	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g10130.1	LOC_Os01g10130	Probable RNA-dependent RNA polymerase 3 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
LOC_Os01g10140.2	LOC_Os01g10140	Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
Nbi_g09401	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g18673	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g36816	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	2	397

External Links

No external refs found!