Solyc12g006320.3.1 (PMH2, ATRH53, Solyc12g006320)

Aliases : PMH2, ATRH53, Solyc12g006320

Description : RNA helicase (PMH)

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g006320.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G22330	PMH2, ATRH53	putative mitochondrial RNA helicase 2	0.05	OrthoFinder output from all 47 species
AT5G26742	emb1138	DEAD box RNA helicase (RH3)	0.03	OrthoFinder output from all 47 species
Adi_g021673	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g023797	PMH1, ATRH9	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g055950	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Adi_g056600	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086708	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107957	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06747	emb1138	group-II intron splicing RNA helicase *(PMH) & original...	0.02	OrthoFinder output from all 47 species
Ala_g23186	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Als_g26679	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aob_g15554	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.01	OrthoFinder output from all 47 species
Aob_g36308	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.05	OrthoFinder output from all 47 species
Cba_g07520	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g18561	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g45347	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g08101	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g16656	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g21286	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g04423	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Dde_g25038	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g02845	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Gb_10087	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Gb_35745	emb1138	RH3 plastidial RNA basal splicing factor	0.03	OrthoFinder output from all 47 species
LOC_Os03g61220.1	emb1138, LOC_Os03g61220	RH3 plastidial RNA basal splicing factor	0.05	OrthoFinder output from all 47 species
Len_g18992	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Len_g23119	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Len_g55591	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g56603	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_2998g0020	emb1138	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Msp_g01214	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g10755	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g13082	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Msp_g22012	emb1138	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Nbi_g03129	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g07434	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g28749	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ore_g38810	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g19369	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Pir_g49478	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g13634	No alias	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Spa_g18181	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g25942	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003219_P001	PMH2, ATRH53,...	RNA helicase (PMH)	0.02	OrthoFinder output from all 47 species
Zm00001e006243_P001	emb1138, Zm00001e006243	RH3 plastidial RNA basal splicing factor	0.02	OrthoFinder output from all 47 species
Zm00001e011716_P001	emb1138, Zm00001e011716	RH3 plastidial RNA basal splicing factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	270	378
IPR011545	DEAD/DEAH_box_helicase_dom	63	230

External Links

No external refs found!

Solyc12g006320.3.1 (PMH2, ATRH53, Solyc12g006320)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation