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  5. Solyc12g006240.2.1

Solyc12g006240.2.1 (COL9, Solyc12g006240)


Aliases : COL9, Solyc12g006240

Description : transcription factor (BBX-CO)


Gene families : OG0001549 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001549_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g006240.2.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AT1G28050 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
AT3G07650 COL9 CONSTANS-like 9 0.12 OrthoFinder output from all 47 species
Aob_g03550 COL9 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0032.g024861 COL9 not classified & original description: CDS=1-1125 0.03 OrthoFinder output from all 47 species
Ceric.35G051200.1 COL9, Ceric.35G051200 BBX class-II transcription factor & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01003473001 COL9 Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_09427 No alias transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
LOC_Os06g19444.1 COL9, LOC_Os06g19444 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os09g33550.1 LOC_Os09g33550 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Msp_g19193 COL9 BBX class-II transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023395_P001 COL9, Zm00001e023395 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 352 394
No external refs found!