LOC_Os03g60910.1


Description : PAP2/TAC2 cofactor of plastid-encoded RNA polymerase


Gene families : OG_01_0008584 (Archaeplastida) Phylogenetic Tree(s): OG_01_0008584_tree ,
OG_02_0007907 (LandPlants) Phylogenetic Tree(s): OG_02_0007907_tree ,
OG_03_0010613 (SeedPlants) Phylogenetic Tree(s): OG_03_0010613_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g60910.1
Cluster HCCA: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.04 Archaeplastida
AT1G74850 PTAC2 plastid transcriptionally active 2 0.16 Archaeplastida
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 Archaeplastida
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.08 Archaeplastida
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.08 Archaeplastida
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 LandPlants
AT1G74850 PTAC2 plastid transcriptionally active 2 0.15 LandPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.08 LandPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.07 LandPlants
Mp7g11380.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.05 LandPlants
Pp3c11_11830V3.1 No alias plastid transcriptionally active 2 0.08 LandPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.03 LandPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.06 LandPlants
AMTR_s00007p00097240 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 SeedPlants
AT1G74850 PTAC2 plastid transcriptionally active 2 0.15 SeedPlants
GSVIVT01007844001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.07 SeedPlants
MA_140582g0010 No alias Pentatricopeptide repeat-containing protein At1g74850,... 0.08 SeedPlants
Solyc03g113630.3.1 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.02 SeedPlants
Zm00001e035964_P003 No alias PAP2/TAC2 cofactor of plastid-encoded RNA polymerase 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 533 577
IPR002885 Pentatricopeptide_repeat 176 221
IPR002885 Pentatricopeptide_repeat 497 522
IPR002885 Pentatricopeptide_repeat 603 630
IPR002885 Pentatricopeptide_repeat 308 368
IPR002885 Pentatricopeptide_repeat 412 471
No external refs found!