1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g073230.1.1

Solyc11g073230.1.1 (Solyc11g073230)


Aliases : Solyc11g073230

Description : Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana (sp|q9lqq1|ppr20_arath : 483.0)


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g073230.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.05 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.04 OrthoFinder output from all 47 species
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.03 OrthoFinder output from all 47 species
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.04 OrthoFinder output from all 47 species
Gb_14900 EMB1025 Pentatricopeptide repeat-containing protein At4g20090... 0.04 OrthoFinder output from all 47 species
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 OrthoFinder output from all 47 species
LOC_Os01g63400.1 LOC_Os01g63400 Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
LOC_Os06g30420.1 EMB1025, LOC_Os06g30420 Pentatricopeptide repeat-containing protein At4g20090... 0.02 OrthoFinder output from all 47 species
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 OrthoFinder output from all 47 species
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 OrthoFinder output from all 47 species
MA_60265g0010 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004392 heme oxygenase (decyclizing) activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006788 heme oxidation IEP HCCA
MF GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0042168 heme metabolic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 203 233
IPR002885 Pentatricopeptide_repeat 416 441
IPR002885 Pentatricopeptide_repeat 310 338
IPR002885 Pentatricopeptide_repeat 341 389
IPR002885 Pentatricopeptide_repeat 235 284
IPR002885 Pentatricopeptide_repeat 135 179
No external refs found!