Solyc11g073050.2.1 (ATRABE1C, ATRAB8A,...)

Aliases : ATRABE1C, ATRAB8A, ARA-3, RAB8A, ARA3, Solyc11g073050

Description : E-class RAB GTPase

Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g073050.2.1

Target	Alias	Description	ECC score	Gene Family Method
AT3G09900	ATRABE1E, ATRAB8E, RABE1e	RAB GTPase homolog E1E	0.02	OrthoFinder output from all 47 species
Adi_g117529	ATRABE1C,...	E-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0130.g049058	ATRABE1D,...	E-class RAB GTPase & original description: CDS=1-924	0.03	OrthoFinder output from all 47 species
Cba_g10294	ATRABE1D,...	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025028001	No alias	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
Gb_23645	ATRABE1C,...	E-class RAB GTPase	0.03	OrthoFinder output from all 47 species
MA_94850g0010	ATRABE1D,...	Ras-related protein RABE1e OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564	ATRABE1C,...	not classified & original description: CDS=148-741	0.02	OrthoFinder output from all 47 species
Sam_g39848	No alias	E-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	17	178

External Links

No external refs found!