1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g071930.2.1

Solyc11g071930.2.1 (Solyc11g071930)


Aliases : Solyc11g071930

Description : pre-mRNA splicing factor (SPF31)


Gene families : OG0006204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006204_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g071930.2.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Aop_g37659 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.22G081400.1 Ceric.22G081400 pre-mRNA splicing factor *(SPF31) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g00789 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037590001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Mp7g14760.1 No alias pre-mRNA splicing factor (SPF31) 0.02 OrthoFinder output from all 47 species
Pnu_g01132 No alias pre-mRNA splicing factor *(SPF31) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e001123_P001 Zm00001e001123 pre-mRNA splicing factor (SPF31) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 50 107
No external refs found!