1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g071810.2.1

Solyc11g071810.2.1 (YAB2, Solyc11g071810)


Aliases : YAB2, Solyc11g071810

Description : transcription factor (YABBY)


Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g071810.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00165390 YAB2,... RNA biosynthesis.transcriptional activation.C2C2... 0.12 OrthoFinder output from all 47 species
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT1G69180 CRC Plant-specific transcription factor YABBY family protein 0.02 OrthoFinder output from all 47 species
AT2G26580 YAB5 plant-specific transcription factor YABBY family protein 0.02 OrthoFinder output from all 47 species
GSVIVT01012246001 CRC RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
GSVIVT01022586001 YAB2 RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
Gb_22423 YAB5 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
LOC_Os07g06620.2 YAB2, LOC_Os07g06620 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
LOC_Os10g36420.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
LOC_Os12g42610.1 YAB5, LOC_Os12g42610 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
MA_407206g0010 YAB5 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Solyc01g010240.3.1 CRC, Solyc01g010240 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e004396_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e012387_P001 YAB5, Zm00001e012387 transcription factor (YABBY) 0.06 OrthoFinder output from all 47 species
Zm00001e012388_P001 YAB5, Zm00001e012388 transcription factor (YABBY) 0.07 OrthoFinder output from all 47 species
Zm00001e012577_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e032845_P002 YAB2, Zm00001e032845 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e038717_P002 CRC, Zm00001e038717 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
Zm00001e041322_P001 AFO, YAB1, FIL,... transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006780 YABBY 12 171
No external refs found!