1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc11g069600.2.1

Solyc11g069600.2.1 (Solyc11g069600)


Aliases : Solyc11g069600

Description : E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana (sp|q9lta6|wav3_arath : 225.0)


Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g069600.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00068590 evm_27.TU.AmTr_v1... E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT2G38970 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
AT5G49665 No alias Zinc finger (C3HC4-type RING finger) family protein 0.02 OrthoFinder output from all 47 species
Als_g15195 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene22775.t1 Aspi01Gene22775 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.09G060200.1 Ceric.09G060200 not classified & original description: pacid=50588484... 0.02 OrthoFinder output from all 47 species
Ceric.24G014600.1 Ceric.24G014600 not classified & original description: pacid=50629291... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000605.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.01 OrthoFinder output from all 47 species
Ehy_g25091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g04890.1 LOC_Os03g04890 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os10g32760.1 LOC_Os10g32760 Probable E3 ubiquitin-protein ligase WAVH2... 0.06 OrthoFinder output from all 47 species
Len_g21346 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11225g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_37441g0010 No alias E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Msp_g15586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15216 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g63138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023647_P001 Zm00001e023647 E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
  • Expression Profile
    • Type GO Term Name Evidence Source
    CC GO:0000145 exocyst IEP HCCA
    MF GO:0004672 protein kinase activity IEP HCCA
    MF GO:0005488 binding IEP HCCA
    MF GO:0005543 phospholipid binding IEP HCCA
    BP GO:0006468 protein phosphorylation IEP HCCA
    BP GO:0006793 phosphorus metabolic process IEP HCCA
    BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
    BP GO:0006887 exocytosis IEP HCCA
    BP GO:0008150 biological_process IEP HCCA
    MF GO:0008289 lipid binding IEP HCCA
    BP GO:0016192 vesicle-mediated transport IEP HCCA
    MF GO:0016301 kinase activity IEP HCCA
    BP GO:0016310 phosphorylation IEP HCCA
    MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
    MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
    CC GO:0018995 host cellular component IEP HCCA
    MF GO:0019842 vitamin binding IEP HCCA
    MF GO:0030170 pyridoxal phosphate binding IEP HCCA
    BP GO:0032940 secretion by cell IEP HCCA
    CC GO:0033643 host cell part IEP HCCA
    CC GO:0033646 host intracellular part IEP HCCA
    CC GO:0033647 host intracellular organelle IEP HCCA
    CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
    MF GO:0036094 small molecule binding IEP HCCA
    BP GO:0036211 protein modification process IEP HCCA
    CC GO:0042025 host cell nucleus IEP HCCA
    MF GO:0043168 anion binding IEP HCCA
    BP GO:0043412 macromolecule modification IEP HCCA
    BP GO:0046903 secretion IEP HCCA
    MF GO:0070279 vitamin B6 binding IEP HCCA
    MF GO:0097159 organic cyclic compound binding IEP HCCA
    CC GO:0099023 vesicle tethering complex IEP HCCA
    BP GO:0140352 export from cell IEP HCCA
    MF GO:1901363 heterocyclic compound binding IEP HCCA
    InterPro domains Description Start Stop
    IPR002035 VWF_A 279 463
    IPR001841 Znf_RING 90 119
    IPR032838 Vwaint_dom 635 707
    No external refs found!