Solyc11g069380.2.1 (CSB3, CLB4, GCPE,...)


Aliases : CSB3, CLB4, GCPE, HDS, ISPG, Solyc11g069380

Description : 4-hydroxy-3-methylbut-2-enyl diphosphate synthase


Gene families : OG0004404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004404_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g069380.2.1
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00175p00057810 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.04 OrthoFinder output from all 47 species
Cre12.g490350 CSB3, CLB4,... Secondary metabolism.terpenoids.methylerythritol... 0.02 OrthoFinder output from all 47 species
Dac_g01725 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Dcu_g08921 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
LOC_Os02g39160.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.05 OrthoFinder output from all 47 species
Len_g47442 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.03 OrthoFinder output from all 47 species
MA_88006g0010 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Mp5g09870.1 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.04 OrthoFinder output from all 47 species
Msp_g01219 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase &... 0.02 OrthoFinder output from all 47 species
Zm00001e015046_P001 CSB3, CLB4,... 4-hydroxy-3-methylbut-2-enyl diphosphate synthase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016114 terpenoid biosynthetic process IEA Interproscan
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
MF GO:0070403 NAD+ binding IEP HCCA
InterPro domains Description Start Stop
IPR004588 IspG_bac-typ 87 728
No external refs found!