Solyc11g069340.2.1 (Solyc11g069340)

Aliases : Solyc11g069340

Description : C3H zinc finger transcription factor

Gene families : OG0005342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005342_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g069340.2.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00175p00051190	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C3H zinc...	0.03	OrthoFinder output from all 47 species
Als_g54453	No alias	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Aop_g04617	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cba_g32266	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Cre02.g101950	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.03	OrthoFinder output from all 47 species
Dde_g24523	No alias	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
Ehy_g01559	No alias	EC_2.1 transferase transferring one-carbon group &...	0.04	OrthoFinder output from all 47 species
GSVIVT01025178001	No alias	RNA biosynthesis.transcriptional activation.C3H zinc...	0.05	OrthoFinder output from all 47 species
Gb_23411	No alias	C3H zinc finger transcription factor	0.07	OrthoFinder output from all 47 species
LOC_Os04g01480.1	LOC_Os04g01480	C3H zinc finger transcription factor	0.07	OrthoFinder output from all 47 species
MA_10432089g0010	No alias	Zinc finger CCCH domain-containing protein 24...	0.03	OrthoFinder output from all 47 species
MA_10435191g0020	No alias	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Mp5g00110.1	No alias	C3H zinc finger transcription factor	0.06	OrthoFinder output from all 47 species
Sam_g15977	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species
Tin_g02795	No alias	EC_2.1 transferase transferring one-carbon group &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025714	Methyltranfer_dom	627	685
IPR010280	U5_MeTrfase_fam	806	855
IPR000571	Znf_CCCH	109	136

External Links

No external refs found!

Solyc11g069340.2.1 (Solyc11g069340)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation