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Aliases : Solyc11g065160
Description : PHD finger transcription factor
Gene families : OG0003668 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003668_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc11g065160.3.1 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G12400 | No alias | DNA binding;zinc ion binding;DNA binding | 0.08 | OrthoFinder output from all 47 species | |
| AT5G35210 | No alias | metalloendopeptidases;zinc ion binding;DNA binding | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g023154 | No alias | PHD finger transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g10447 | No alias | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g29357 | No alias | PHD finger transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene10761.t1 | Aspi01Gene10761 | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene10763.t1 | Aspi01Gene10763 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene36310.t1 | Aspi01Gene36310 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene36312.t1 | Aspi01Gene36312 | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g75389 | No alias | PHD finger transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.29G051900.1 | Ceric.29G051900 | PHD finger transcription factor & original description:... | 0.06 | OrthoFinder output from all 47 species | |
| Cre05.g247000 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g14658 | No alias | PHD finger transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g04154 | No alias | PHD finger transcription factor & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g09845 | No alias | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g08699 | No alias | PHD finger transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g17420 | No alias | PHD finger transcription factor & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ehy_g31521 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031411001 | No alias | RNA biosynthesis.transcriptional activation.PHD finger... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01037231001 | No alias | RNA biosynthesis.transcriptional activation.PHD finger... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os11g05130.1 | LOC_Os11g05130 | PHD finger transcription factor | 0.07 | OrthoFinder output from all 47 species | |
| Lfl_g05757 | No alias | PHD finger transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| MA_10689g0010 | No alias | PHD finger transcription factor | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g03480.1 | No alias | PHD finger transcription factor | 0.08 | OrthoFinder output from all 47 species | |
| Ore_g38137 | No alias | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03291 | No alias | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0007.g003692 | No alias | PHD finger transcription factor & original description:... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g25995 | No alias | PHD finger transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e035778_P001 | Zm00001e035778 | PHD finger transcription factor | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| MF | GO:0003689 | DNA clamp loader activity | IEP | HCCA |
| CC | GO:0005663 | DNA replication factor C complex | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0031047 | RNA-mediated gene silencing | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| No external refs found! |