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  5. Solyc11g065120.3.1

Solyc11g065120.3.1 (Solyc11g065120)


Aliases : Solyc11g065120

Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 872.0)


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g065120.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00120950 evm_27.TU.AmTr_v1... PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
AT1G65920 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from all 47 species
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.06 OrthoFinder output from all 47 species
AT5G12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 OrthoFinder output from all 47 species
AT5G19420 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 OrthoFinder output from all 47 species
Adi_g014208 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g117138 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04725 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54964.t1 Aspi01Gene54964 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene71481.t1 Aspi01Gene71481 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0027.g023605 No alias not classified & original description: CDS=735-3878 0.03 OrthoFinder output from all 47 species
Azfi_s0167.g054488 No alias not classified & original description: CDS=1991-5185 0.03 OrthoFinder output from all 47 species
Cba_g04091 No alias regulatory protein *(RLD) of gravity sensing & original... 0.02 OrthoFinder output from all 47 species
Cba_g27720 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.35G058700.1 Ceric.35G058700 not classified & original description: pacid=50582057... 0.05 OrthoFinder output from all 47 species
Cre16.g691050 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Dcu_g04980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23649 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001675001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.07 OrthoFinder output from all 47 species
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
LOC_Os01g72320.1 LOC_Os01g72320 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
LOC_Os04g58960.1 PRAF1, LOC_Os04g58960 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
MA_54149g0010 PRAF1 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Nbi_g06824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16726 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g05000 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13544 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017246 No alias not classified & original description: CDS=1-3951 0.02 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 OrthoFinder output from all 47 species
Zm00001e007139_P001 Zm00001e007139 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e023246_P001 Zm00001e023246 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e028276_P001 Zm00001e028276 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e028312_P001 Zm00001e028312 PH, RCC1 and FYVE domains-containing protein 1... 0.09 OrthoFinder output from all 47 species
Zm00001e029685_P002 PRAF1, Zm00001e029685 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR027988 BRX_N 939 974
IPR001849 PH_domain 45 151
IPR013591 Brevis_radix_dom 1055 1110
IPR000306 Znf_FYVE 678 744
IPR000408 Reg_chr_condens 521 570
IPR000408 Reg_chr_condens 627 674
IPR000408 Reg_chr_condens 573 622
IPR000408 Reg_chr_condens 458 506
IPR000408 Reg_chr_condens 353 401
IPR000408 Reg_chr_condens 404 454
No external refs found!