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  5. Solyc11g044470.3.1

Solyc11g044470.3.1 (Solyc11g044470)


Aliases : Solyc11g044470

Description : Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana (sp|q9m1s3|arp1_arath : 118.0)


Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g044470.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00080p00053460 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00099p00115860 evm_27.TU.AmTr_v1... Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G33470 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.12 OrthoFinder output from all 47 species
AT5G53680 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Ala_g18787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g19204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g48208 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0442.g070359 No alias not classified & original description: CDS=461-1399 0.06 OrthoFinder output from all 47 species
Cba_g13416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g26221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037134001 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os03g17760.1 LOC_Os03g17760 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_18853g0020 No alias Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Ore_g15828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001294_P001 Zm00001e001294 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e018568_P001 Zm00001e018568 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e037573_P001 Zm00001e037573 Probable RNA-binding protein ARP1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 70
No external refs found!