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  5. LOC_Os03g58720.1

LOC_Os03g58720.1


Description : pre-60S ribosomal subunit assembly factor (NOP4)


Gene families : OG_01_0005453 (Archaeplastida) Phylogenetic Tree(s): OG_01_0005453_tree ,
OG_02_0006804 (LandPlants) Phylogenetic Tree(s): OG_02_0006804_tree ,
OG_03_0008625 (SeedPlants) Phylogenetic Tree(s): OG_03_0008625_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g58720.1
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 Archaeplastida
Cpa|evm.model.tig00000144.75 No alias No description available 0.06 Archaeplastida
Cre02.g104650 No alias No description available 0.07 Archaeplastida
GSVIVT01024222001 No alias No description available 0.09 Archaeplastida
MA_10433709g0020 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.03 Archaeplastida
MA_10436192g0010 No alias No annotation 0.04 Archaeplastida
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.07 Archaeplastida
Pp3c11_7560V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
Smo419047 No alias No description available 0.03 Archaeplastida
Solyc01g109990.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e011846_P001 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.05 Archaeplastida
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.02 LandPlants
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 LandPlants
GSVIVT01024222001 No alias No description available 0.09 LandPlants
MA_10436192g0010 No alias No annotation 0.03 LandPlants
Mp7g13580.1 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.07 LandPlants
Pp3c11_7560V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 LandPlants
Smo419047 No alias No description available 0.03 LandPlants
Solyc01g109990.4.1 No alias no hits & (original description: none) 0.08 LandPlants
Zm00001e011846_P001 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.05 LandPlants
AMTR_s00010p00226160 evm_27.TU.AmTr_v1... No description available 0.02 SeedPlants
AT2G21440 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 SeedPlants
GSVIVT01024222001 No alias No description available 0.09 SeedPlants
MA_10436192g0010 No alias No annotation 0.03 SeedPlants
Solyc01g109990.4.1 No alias no hits & (original description: none) 0.07 SeedPlants
Zm00001e011846_P001 No alias pre-60S ribosomal subunit assembly factor (NOP4) 0.05 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 36 106
IPR000504 RRM_dom 304 373
IPR000504 RRM_dom 524 584
No external refs found!